Search results for "Joint species distribution model"
showing 10 items of 12 documents
Traits mediate niches and co‐occurrences of forest beetles in ways that differ among bioclimatic regions
2021
Aim The aim of this study was to investigate the role of traits in beetle community assembly and test for consistency in these effects among several bioclimatic regions. We asked (1) whether traits predicted species’ responses to environmental gradients (i.e. their niches), (2) whether these same traits could predict co-occurrence patterns and (3) how consistent were niches and the role of traits among study regions. Location Boreal forests in Norway and Finland, temperate forests in Germany. Taxon Wood-living (saproxylic) beetles. Methods We compiled capture records of 468 wood-living beetle species from the three regions, along with nine morphological and ecological species traits. Eight …
Accounting for species interactions is necessary for predicting how arctic arthropod communities respond to climate change
2021
Species interactions are known to structure ecological communities. Still, the influence of climate change on biodiversity has primarily been evaluated by correlating individual species distributions with local climatic descriptors, then extrapolating into future climate scenarios. We ask whether predictions on arctic arthropod response to climate change can be improved by accounting for species interactions. For this, we use a 14-year-long, weekly time series from Greenland, resolved to the species level by mitogenome mapping. During the study period, temperature increased by 2 degrees C and arthropod species richness halved. We show that with abiotic variables alone, we are essentially un…
Does trait-based joint species distribution modelling reveal the signature of competition in stream macroinvertebrate communities?
2021
1. The occupancy and abundance of species are jointly driven by local factors, such as environmental characteristics and biotic interactions, and regional‐scale factors, such as dispersal and climate. Recently, it has been shown that biotic interactions shape species occupancies and abundances beyond local extents. However, for small ectothermic animals, particularly for those occurring in freshwater environments, the importance of biotic interactions remains understudied. Species‐to‐species associations from joint species distribution models (i.e. species associations while controlling for environmental characteristics) are increasingly used to draw hypotheses of which species possibly sho…
Species co-occurrence networks of ground beetles in managed grasslands
2020
AbstractGrassland biodiversity, including traditional rural biotopes maintained by traditional agricultural practices, has become threatened worldwide. Road verges have been suggested to be complementary or compensatory habitats for species inhabiting grasslands. Species co-occurrence patterns linked with species traits can be used to separate between the different mechanisms (stochasticity, environmental filtering, biotic interactions) behind community structure. Here, we study species co-occurrence networks and underlying mechanisms of ground beetle species (Carabidae) in three different managed grassland types (meadows, pastures, road verges, n = 12 in each type) in Central Finland. We a…
Choosy beetles : How host trees and southern boreal forest naturalness may determine dead wood beetle communities
2021
Wood-living beetles make up a large proportion of forest biodiversity and contribute to important ecosystem services, including decomposition. Beetle communities in managed southern boreal forests are less species rich than in natural and near-natural forest stands. In addition, many beetle species rely primarily on specific tree species. Yet, the associations between individual beetle species, forest management category, and tree species are seldom quantified, even for red-listed beetles. We compiled a beetle capture dataset from flight intercept traps placed on Norway spruce (Picea abies), oak (Quercus sp.), and Eurasian aspen (Populus tremulae) trees in 413 sites in mature managed forest…
Analyzing environmental‐trait interactions in ecological communities with fourth‐corner latent variable models
2021
In ecological community studies it is often of interest to study the effect of species related trait variables on abundances or presence-absences. Specifically, the interest may lay in the interactions between environmental and trait variables. An increasingly popular approach for studying such interactions is to use the so-called fourth-corner model, which explicitly posits a regression model where the mean response of each species is a function of interactions between covariate and trait predictors (among other terms). On the other hand, many of the fourth-corner models currently applied in the literature are too simplistic to properly account for variation in environmental and trait resp…
Effects of density, species interactions, and environmental stochasticity on the dynamics of British bird communities
2022
Our knowledge of the factors affecting species abundances is mainly based on time-series analyses of a few well-studied species at single or few localities, but we know little about whether results from such analyses can be extrapolated to the community level. We apply a joint species distribution model to long-term time-series data on British bird communities to examine the relative contribution of intra- and interspecific density dependence at different spatial scales, as well as the influence of environmental stochasticity, to spatiotemporal interspecific variation in abundance. Intraspecific density dependence has the major structuring effect on these bird communities. In addition, envi…
Traits and phylogenies modulate the environmental responses of wood-inhabiting fungal communities across spatial scales
2022
Identifying the spatial scales at which community assembly processes operate is fundamental for gaining a mechanistic understanding of the drivers shaping ecological communities. In this study, we examined whether and how traits and phylogenetic relationships structure fungal community assembly across spatial scales. We applied joint species distribution modelling to a European-scale dataset on 215 wood-inhabiting fungal species, which includes data on traits, phylogeny and environmental variables measured at the local (log-level) and regional (site-level) scales. At the local scale, wood-inhabiting fungal communities were mostly structured by deadwood decay stage, and the trait and phyloge…
Data from: Choosy beetles: how host trees and southern boreal forest naturalness may determine dead wood beetle communities
2021
See methods section of paper for detailed information on dataset and sources; briefly, these .csv files includes numbers of each beetle species captured at all sites used in the project, as well as information about each site and about each species. Data from: Choosy beetles: how host trees and southern boreal forest naturalness may determine dead wood beetle communities Ryan C. Burner, Tone Birkemoe, Jörg G. Stephan, Lukas Drag, Jörg Muller, Otso Ovakainen, Mária Potterf, Olav Skarpaas, Tord Snall, Anne Sverdrup-Thygeson Forest Ecology and Management, 2021 From abstract of paper: Wood-living beetles make up a large proportion of forest biodiversity, and contribute to important ecosystem se…
Data from: Wood-inhabiting fungi with tight associations with other species have declined as a response to forest management
2016
Research on mutualistic and antagonistic networks, such as plant–pollinator and host–parasite networks, has shown that species interactions can influence and be influenced by the responses of species to environmental perturbations. Here we examine whether results obtained for directly observable networks generalize to more complex networks in which species interactions cannot be observed directly. As a case study, we consider data on the occurrences of 98 wood-inhabiting fungal species in managed and natural forests. We specifically ask if and how much the positions of wood-inhabiting fungal species within the interaction networks influence their responses to forest management. For this, we…